PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW20722

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

M-type_MADS

Protein Properties

Length: 211aa MW: 24462.4 Da PI: 8.4837

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW20722	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.9	7e-15	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i ++s+r+ t+ kR+ ++KK +E+S+LC+++++ i++s + OIW20722 11 IISESKRKATYKKRKSCLIKKTNEISTLCGIQACAIVYSDD 51 67899**********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTRKKVNLEY IISESKRKAT YKKRKSCLIK KTNEISTLCG IQACAIVYSD DEPHPEVWPS 60 HFDVQRVLHK FEALPELEKD QKMLDQETFL KKRIIKAREH LMKQRNQNMK KKMDLLMFKC 120 LSSGTIVDNN IDVSCFLWVI DETLKEVELK KTRDQSQSGI HVAENGSKSL SGEKEPVDAH 180 VQLMMPSVDA MLKQDWLMDS VHAVGNEMLH F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVNLEYIISESKRKATYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-36	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIW20722