PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW19748

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 379aa MW: 42255.6 Da PI: 6.7736

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW19748	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.8e-10	108	132	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f+ G C G++C+FaHg OIW19748 108 YKTRMCINFRL-GSCTNGENCNFAHG 132 9********.***********9 PP
2	zf-CCCH	20.5	8.7e-07	172	195	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ + + +C+yG+rC+F H OIW19748 172 KMKLCKKYCNGEECPYGERCSFLH 195 7899****66********** PP
3	zf-CCCH	34.1	4.5e-11	258	284	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + G+C++G+ C+FaHg+ OIW19748 258 WKTKLCIKWETRGQCPFGEGCNFAHGE 284 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MSFFDALPPF VTSSPPYASD SLTDAIVLSA PPQFPVNNEP FIQHSPSDDH DQSPLFKRTR 60 TTSSESNNNN HSNALPYPPP MMMMHPAKNN NNNPISNKLG TGMGHIFYKT RMCINFRLGS 120 CTNGENCNFA HGVEDMRKPP PNWQELIGLR NNNEEQKLAA WNWDDDQTII HKMKLCKKYC 180 NGEECPYGER CSFLHEDPSK FRDDSGRIRE SSAIKIGTNE SPKSYGDGYD YNNSKTNKAV 240 VMNVGLNAAR GKIRSTFWKT KLCIKWETRG QCPFGEGCNF AHGESELQVL GGRTDTEAAI 300 SIPIATYAPT PSLPKVASAP VIDVAPPLVN IARAPLANEV EPGKKSLLKW KGPKKINRIY 360 GDWLDDDSLE ENMPSEMDI

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MSFFDALPPF VTSSPPYASD SLTDAIVLSA PPQFPVNNEP FIQHSPSDDH DQSPLFKRTR  60
TTSSESNNNN HSNALPYPPP MMMMHPAKNN NNNPISNKLG TGMGHIFYKT RMCINFRLGS  120
CTNGENCNFA HGVEDMRKPP PNWQELIGLR NNNEEQKLAA WNWDDDQTII HKMKLCKKYC  180
NGEECPYGER CSFLHEDPSK FRDDSGRIRE SSAIKIGTNE SPKSYGDGYD YNNSKTNKAV  240
VMNVGLNAAR GKIRSTFWKT KLCIKWETRG QCPFGEGCNF AHGESELQVL GGRTDTEAAI  300
SIPIATYAPT PSLPKVASAP VIDVAPPLVN IARAPLANEV EPGKKSLLKW KGPKKINRIY  360
GDWLDDDSLE ENMPSEMDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-72	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW19748