PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW18569

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 375aa MW: 41486.9 Da PI: 7.11

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW18569	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	103	127	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G++C+FaHg OIW18569 103 FKTRMCAKFRL-GSCRNGENCNFAHG 127 69*******.***********9 PP
2	zf-CCCH	27	8e-09	169	192	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ ++ + +C++G+rC+F H OIW18569 169 KMKLCKKYYNGEECPFGERCNFLH 192 789*****66********** PP
3	zf-CCCH	42.9	7.8e-14	254	280	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++Gd C+FaHg+ OIW18569 254 WKTKLCIKWETTGHCPFGDDCHFAHGQ 280 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MSFFDDLPPY VPSPPPYAAA QATDAIVLSL EQQFPENNES FTPHSPFNDH DQPSSFKRPR 60 TSSESSNHSN AVQFPPRMTT MHSQNNNNNA SNKGGSGTGH IFFKTRMCAK FRLGSCRNGE 120 NCNFAHGVED MRQPPPNWQE LVGNAGSNEE QQQQRPSGNW DDDQKIIHKM KLCKKYYNGE 180 ECPFGERCNF LHEDPAKFRD DSGRIRESSA ISIGTNGSPK SYRDGYYNNS ETSKAVTANV 240 GINAYRGNVR STFWKTKLCI KWETTGHCPF GDDCHFAHGQ SELHVLGGRT ETEAAGAIPI 300 STYATVPTLP KVTSVPSIDA APAPSNIASP PLANEVEQGK KSLLKWKGPK KINRIYADWL 360 DDFPLVQNVA NGAET

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MSFFDDLPPY VPSPPPYAAA QATDAIVLSL EQQFPENNES FTPHSPFNDH DQPSSFKRPR  60
TSSESSNHSN AVQFPPRMTT MHSQNNNNNA SNKGGSGTGH IFFKTRMCAK FRLGSCRNGE  120
NCNFAHGVED MRQPPPNWQE LVGNAGSNEE QQQQRPSGNW DDDQKIIHKM KLCKKYYNGE  180
ECPFGERCNF LHEDPAKFRD DSGRIRESSA ISIGTNGSPK SYRDGYYNNS ETSKAVTANV  240
GINAYRGNVR STFWKTKLCI KWETTGHCPF GDDCHFAHGQ SELHVLGGRT ETEAAGAIPI  300
STYATVPTLP KVTSVPSIDA APAPSNIASP PLANEVEQGK KSLLKWKGPK KINRIYADWL  360
DDFPLVQNVA NGAET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-79	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW18569