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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIW12449 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | MYB | ||||||||
| Protein Properties | Length: 324aa MW: 35846.4 Da PI: 8.6339 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54 | 3.8e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv +++++G+g+W+t++ g+ R+ k+c++rw +yl
OIW12449 13 KGPWTPEEDIILVSYIQEHGPGNWRTVPTNTGLCRCSKSCRLRWTNYL 60
79********************************************97 PP
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| 2 | Myb_DNA-binding | 51.7 | 2e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E++ ++++ ++lG++ W++Ia++++ +Rt++++k++w++yl
OIW12449 66 RGNFTKQEEKMIIHLQALLGNR-WAAIASYLP-HRTDNDIKNYWNTYL 111
89********************.*********.*************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 324 aa Download sequence |
MGRLPCCDKG VKKGPWTPEE DIILVSYIQE HGPGNWRTVP TNTGLCRCSK SCRLRWTNYL 60 RPGIKRGNFT KQEEKMIIHL QALLGNRWAA IASYLPHRTD NDIKNYWNTY LKKRLEKSES 120 GSEGTLGNVY NSASNPVTKG QWEKRLQTDI NMAKKALTEA LSPKKMLSLH EPNDDSISND 180 IGSIKSTTPN SICYASSADN IARLLKGWMK NPPNKASSKS NSIVSTQNSF NNLAGIDTAS 240 SEGTPSVGAK GSVEFSETFK SLFGYESLDY SSNSEFSPSL SHEASTLCQD ERKPGTTSIA 300 EMPFSLLEKW LLDDTKIGAD ATLF |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G28910.1 | 7e-99 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIW12449 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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