PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW11451

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 700aa MW: 76619.6 Da PI: 6.4668

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW11451	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OIW11451 276 PCPDFRK-GACRRGDMCEYAHG 296 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MNHLSIDTGD SFASLLELAA NNDVEGFKRL IECDPSSVDE VGLWYGRRKG SKQMINEHRT 60 PLMVAATYGS IEIMKMILSL SDADINRSCG LDKSTALHCA ASGGAEDAVD SVKLLLAAGA 120 DPNSVDANGH RPVDVIVFPP KLECVKNSLE QLLQTDDSIA GCNLRVITTS SFNSYSPPLS 180 NSPENGSPSA SDFQLKMKPK DAPVSSASEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC 300 WLHPAQYRTR LCKDGINCSR RVCFFAHTAE ELRPLYVSTG SAVLSPHAST SAAMDFAAAL 360 SMLPGSPSSM SIMSPSPFTP PMSPSANGMH SSVPWPQPNV PALHLPGSNL QSSRLRSSLH 420 ARDIPMDDFD LFSDYDQQHL LNELSCLSPQ HPMNSNNLNR SGRMKPLTPS NLDDLFSAES 480 SSPRFADGSL ASNVFSPTHK SAVFNQFQQQ QNMLSPVNTN FSPKNVEHPL FQAASFGAQS 540 SGRMSPRNME PISPMNSRMS MLAQREKQQQ FRSLSSRELG SNSAAAAAAS ANSWSRWGSP 600 NGRADWAAGI DDFNKHRRSS SFELGNNGEE PDLSWVQSLV KESPTDIKDK LATNVPNVEA 660 AGSSGEGSNI NTSQKESVDH AVLGAWLEQM QLDHLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MNHLSIDTGD SFASLLELAA NNDVEGFKRL IECDPSSVDE VGLWYGRRKG SKQMINEHRT  60
PLMVAATYGS IEIMKMILSL SDADINRSCG LDKSTALHCA ASGGAEDAVD SVKLLLAAGA  120
DPNSVDANGH RPVDVIVFPP KLECVKNSLE QLLQTDDSIA GCNLRVITTS SFNSYSPPLS  180
NSPENGSPSA SDFQLKMKPK DAPVSSASEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGINCSR RVCFFAHTAE ELRPLYVSTG SAVLSPHAST SAAMDFAAAL  360
SMLPGSPSSM SIMSPSPFTP PMSPSANGMH SSVPWPQPNV PALHLPGSNL QSSRLRSSLH  420
ARDIPMDDFD LFSDYDQQHL LNELSCLSPQ HPMNSNNLNR SGRMKPLTPS NLDDLFSAES  480
SSPRFADGSL ASNVFSPTHK SAVFNQFQQQ QNMLSPVNTN FSPKNVEHPL FQAASFGAQS  540
SGRMSPRNME PISPMNSRMS MLAQREKQQQ FRSLSSRELG SNSAAAAAAS ANSWSRWGSP  600
NGRADWAAGI DDFNKHRRSS SFELGNNGEE PDLSWVQSLV KESPTDIKDK LATNVPNVEA  660
AGSSGEGSNI NTSQKESVDH AVLGAWLEQM QLDHLVAQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	53	GRRKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW11451