PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIW11449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 700aa MW: 76672.6 Da PI: 6.5055 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 276 | 296 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OIW11449 276 PCPDFRK-GACRRGDMCEYAHG 296 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence |
MNHLSIDTGD SFASLLELAA NNDVEGFKRL IECDPSSVDE VGLWYGRRKG SKQMINEHRT 60 PLMVAATYGS IEIMKMILSL SDADINRSCG LDKSTALHCA ASGGAEDAVD SVKLLLAAGA 120 DPNSVDANGH RPVDVIVFPP KLECVKNSLE QLLQTDDSIA GCNLRVITTS SFNSYSPPLS 180 NSPENGSPSA SDFQLKMKPK DAPVSSASEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC 300 WLHPAQYRTR LCKDGINCSR RVCFFAHTAE ELRPLYISTG SAVPSPRSST SSAMDFAAAM 360 SMLPGSPSSM SVMSPSPFTP PMSPSANGMH SSVPWPQPNV PALHLPGSNL QSSRLRSSLH 420 ARDIPMDDFD LFSDYDQQHL LNELSCLSPQ HPMNSNNLNR SGRMKPLTPS NLDDLFSAES 480 SSPRFADGSL ASNVFSPTHK SAVFNQFQQQ QNMLSPVNTN FSPKNVEHPL FQAASFGAQS 540 SGRMSPRNME PISPMNSRMS MLAQREKQQQ FRSLSSRELG SNSAAAAAAS ANSWSRWGSP 600 NGRADWAAGI DDFNKHRRSS SFELGNNGEE PDLSWVQSLV KESPTDIKDK LATNVPNVEA 660 AGSSGEGSNI NTSQKESVDH AVLGAWLEQM QLDHLVAQQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 53 | GRRKGSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIW11449 |