PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW09538

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 661aa MW: 72368.2 Da PI: 5.519

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW09538	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.3e-07	261	281	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg OIW09538 261 PCPEFRK-GLCSKGDACEYAHG 281 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MCTGSNGLHH RISALLEFSA ADDVKGFKEA VEEEGHDVNE VGLWYGRRVG SKEVGYEERT 60 PLMIAAMFGS KGVLSFILES GVVDVNKACG SDRATALHCA VVGGSTASPE VIRLLLHASA 120 DVSAVDANGN RCYDLIGIVS NSIFNSRKRI LEAVLEGREG VDEAGLTFEE ADGQMVRQQQ 180 LYIDSPRVSK DGTEKKDYHV DLSLPDIKDG MYSTDEFRMY TFKVKPCSRA YSHDWTECPF 240 VHPCENARRR DPVKYQYSCV PCPEFRKGLC SKGDACEYAH GIFECWLHPA QYRTRLCKDE 300 SGCMRRVCFF AHKLEELRPL YASTGSALPS PQSYPASASS LDIGLDSRLS LGSPSVLTPP 360 ASAPPLIPSG ASSTAGGAMW QSPTLQLARS RLKTALNARD FDLDIELFGH ENRQQMLLLD 420 EMAGFSPPSK WKSTMAKSPS FPVSLGDDAG ELNRLAGVHT NLEDIFGSQL QSPTGIQAHQ 480 NVNKQLRGYS SSLSPSNVIG SPSFMVDLSG SASTLSLNSR NAALSKQSQN FIERCVVNHN 540 SELSSPVEPS IFSGWGSPDG KLDWGIRGEE LNKMRKSASF GFRATNSPLT LAATKAPPNV 600 DEPDVSWVHS LVKDGPPIES GQYSVEEQRQ QPQRYLNNGT DVVPAWLEQL YMEQEQEQMV 660 A

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MCTGSNGLHH RISALLEFSA ADDVKGFKEA VEEEGHDVNE VGLWYGRRVG SKEVGYEERT  60
PLMIAAMFGS KGVLSFILES GVVDVNKACG SDRATALHCA VVGGSTASPE VIRLLLHASA  120
DVSAVDANGN RCYDLIGIVS NSIFNSRKRI LEAVLEGREG VDEAGLTFEE ADGQMVRQQQ  180
LYIDSPRVSK DGTEKKDYHV DLSLPDIKDG MYSTDEFRMY TFKVKPCSRA YSHDWTECPF  240
VHPCENARRR DPVKYQYSCV PCPEFRKGLC SKGDACEYAH GIFECWLHPA QYRTRLCKDE  300
SGCMRRVCFF AHKLEELRPL YASTGSALPS PQSYPASASS LDIGLDSRLS LGSPSVLTPP  360
ASAPPLIPSG ASSTAGGAMW QSPTLQLARS RLKTALNARD FDLDIELFGH ENRQQMLLLD  420
EMAGFSPPSK WKSTMAKSPS FPVSLGDDAG ELNRLAGVHT NLEDIFGSQL QSPTGIQAHQ  480
NVNKQLRGYS SSLSPSNVIG SPSFMVDLSG SASTLSLNSR NAALSKQSQN FIERCVVNHN  540
SELSSPVEPS IFSGWGSPDG KLDWGIRGEE LNKMRKSASF GFRATNSPLT LAATKAPPNV  600
DEPDVSWVHS LVKDGPPIES GQYSVEEQRQ QPQRYLNNGT DVVPAWLEQL YMEQEQEQMV  660
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW09538