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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIW08133 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 283aa MW: 31489.8 Da PI: 5.2954 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.5 | 1.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl d+v r
OIW08133 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSR 86
5789**************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 283 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY SHGHSEAGAD DRAISKRRKA AAEDGNDSDE 120 EAKRGKMREL SHSGSTGRGR GRGRGRGRGR GARTAERETH HQEAEPEPCT IVQHGSEHNT 180 DTIMTMHDGS ESKELLKENI SVPVENNESF QNIDLNANMN ENEDKNASTA ANAPLSEPAT 240 EIKHEEIPGW SLSDVSKMAI DTMQLAHLGR GLEDEDEDYD EEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 138 | 147 | RGRGRGRGRG |
| 2 | 138 | 148 | RGRGRGRGRGR |
| 3 | 140 | 149 | RGRGRGRGRG |
| 4 | 140 | 150 | RGRGRGRGRGR |
| 5 | 142 | 151 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 9e-73 | NF-YC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIW08133 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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