PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW07982

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 705aa MW: 76689.9 Da PI: 6.9114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW07982	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	321	341	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++ d C +aHg OIW07982 321 PCPDFRK-GACRRNDMCEYAHG 341 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MIVIMLQLSK DPWRSREVLQ DYVPSFPSDL GVSTNKPSDM KTLTIHTEDS FSSLLELASN 60 NDTESFKALL DKDPSSINEV GLWYARQNGS KQIVLEHRTP LMVAATYGSI EVMKIILSRP 120 EADVNLACAM NESTALHCAA SGGSVNVVDA VKILLLAGAN PNCVDANGNR PVDVIVVHPK 180 LQGVKPVIEE LLSGSASDVS VGEFSVPACV INSSPASPVR LSSPENTMLY SPSGSPCSPM 240 ALKFNDAVVG SVAEKKEYPI DPSLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF 300 VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRNDMCEYAH GVFECWLHPA QYRTRLCKDG 360 TSCDRRVCFF AHTTEELRPL YASMGSAVPS PRSFASTPNV MDMAAALSLF PGSPSSVSSM 420 SPSCFSQPMS PSADGISLSS AAWSQPNVPT LHLPGSNIQC SRLRSSLSAR DIPPKDLNVL 480 SDFDCQQQVL NDLGCFSQLH HGGAVSVSRS GRSKTLTPSN LEELFSSEIL SPRYSDPALA 540 SVFSPHKSAV LNQFQQLQTM LTPINTNMLS PKNVEHPSLQ APFGISSPGR MSPRCLEPIS 600 PMNSRISAFA QREKQQHQLL SLSSRDLAAN NPASAVGSPV STWSKWGSPN GKADWSVNGE 660 ELGRRSKIAS SFELKNNGEE PDLSLVQSLV KESPAEMIKE KLTAC

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MIVIMLQLSK DPWRSREVLQ DYVPSFPSDL GVSTNKPSDM KTLTIHTEDS FSSLLELASN  60
NDTESFKALL DKDPSSINEV GLWYARQNGS KQIVLEHRTP LMVAATYGSI EVMKIILSRP  120
EADVNLACAM NESTALHCAA SGGSVNVVDA VKILLLAGAN PNCVDANGNR PVDVIVVHPK  180
LQGVKPVIEE LLSGSASDVS VGEFSVPACV INSSPASPVR LSSPENTMLY SPSGSPCSPM  240
ALKFNDAVVG SVAEKKEYPI DPSLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF  300
VHPGENARRR DPRKFHYSCV PCPDFRKGAC RRNDMCEYAH GVFECWLHPA QYRTRLCKDG  360
TSCDRRVCFF AHTTEELRPL YASMGSAVPS PRSFASTPNV MDMAAALSLF PGSPSSVSSM  420
SPSCFSQPMS PSADGISLSS AAWSQPNVPT LHLPGSNIQC SRLRSSLSAR DIPPKDLNVL  480
SDFDCQQQVL NDLGCFSQLH HGGAVSVSRS GRSKTLTPSN LEELFSSEIL SPRYSDPALA  540
SVFSPHKSAV LNQFQQLQTM LTPINTNMLS PKNVEHPSLQ APFGISSPGR MSPRCLEPIS  600
PMNSRISAFA QREKQQHQLL SLSSRDLAAN NPASAVGSPV STWSKWGSPN GKADWSVNGE  660
ELGRRSKIAS SFELKNNGEE PDLSLVQSLV KESPAEMIKE KLTAC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW07982