PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW00470

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 858aa MW: 95277.8 Da PI: 8.4681

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW00470	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	4e-06	146	167	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 Cr fa G+C++G++C+F H OIW00470 146 QTCRAFAS-GECRRGSQCHFLHH 167 57999999.*************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MSGSGTKRYS KWDLRDELEY AHDSKQVWSS ADIAGNNSSK SSYMEKNDRL KPRMGLSSKE 60 PFSRGRGSNK DDILNKDYRV SDATIADGSH SMKMSPGFEE RKHKRHSQSP KNDLRRSSRS 120 RSPARGLRLD SGVNGRNRTG AGGLTQTCRA FASGECRRGS QCHFLHHNDQ NYEDNGEIRR 180 RQDGAPKYFA PHENGDFLRS GRSNEGCTNF AKGGCRMGAS CKYVHHTNSD CFSKVSVDES 240 PRKREIGRRC IENSFEQSSR YGVNHSGDTP CKFFSSGNCR NGKQCRYSHD RQACMSPNRR 300 LRDDRSRSNH GGDQVLDRPK VSDSVSHNER LRYDRWSSDG SMADLDEVWD RPKQNDLVGG 360 PGTVKQVENN KNEILGAPEL GFTAQPLRDG WDHSLDKNML HCESPFSSDE KETNCLTSED 420 TFANIQISQS IGAGIWPGDE EMSPDWKYGV GSSSHLEVKH GENKPQVYPG NHMLNLPVTI 480 HSLSIETIYR ASAKPNFHSG VFVLTCHDKS GTNKSADLHI YLIFSTGSLP GQGFNQNAQN 540 VNSSSRHVFV PSQPELSIVR PRVGTVEGMQ NKEISTDKKY TVGPDIMDAS ISQAGLRNPP 600 TQNIVSNEQL AQLTRLTASL AHILGTGQQL PQMYAPVNSH DAKDTSFPGG TEGSGKPVST 660 TFIKPAPAVG FQKQYDPVCD SIETKNANAW EGPPGFSPIK KIAEDAVEIL PLLSNSGRQN 720 LIQLHQGENI EANKENNEVV DEEMQISPCD NKTKKDNGPL GSMDQNGVHD EAKKKDVKGI 780 RAFKHSLVEF IKELLKPTWK EGHITKEDYK AIVKKVSDKV TGTVQRLHIP QTQEKIDHYL 840 SSSKPKLNKL VQGEVVAL

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MSGSGTKRYS KWDLRDELEY AHDSKQVWSS ADIAGNNSSK SSYMEKNDRL KPRMGLSSKE  60
PFSRGRGSNK DDILNKDYRV SDATIADGSH SMKMSPGFEE RKHKRHSQSP KNDLRRSSRS  120
RSPARGLRLD SGVNGRNRTG AGGLTQTCRA FASGECRRGS QCHFLHHNDQ NYEDNGEIRR  180
RQDGAPKYFA PHENGDFLRS GRSNEGCTNF AKGGCRMGAS CKYVHHTNSD CFSKVSVDES  240
PRKREIGRRC IENSFEQSSR YGVNHSGDTP CKFFSSGNCR NGKQCRYSHD RQACMSPNRR  300
LRDDRSRSNH GGDQVLDRPK VSDSVSHNER LRYDRWSSDG SMADLDEVWD RPKQNDLVGG  360
PGTVKQVENN KNEILGAPEL GFTAQPLRDG WDHSLDKNML HCESPFSSDE KETNCLTSED  420
TFANIQISQS IGAGIWPGDE EMSPDWKYGV GSSSHLEVKH GENKPQVYPG NHMLNLPVTI  480
HSLSIETIYR ASAKPNFHSG VFVLTCHDKS GTNKSADLHI YLIFSTGSLP GQGFNQNAQN  540
VNSSSRHVFV PSQPELSIVR PRVGTVEGMQ NKEISTDKKY TVGPDIMDAS ISQAGLRNPP  600
TQNIVSNEQL AQLTRLTASL AHILGTGQQL PQMYAPVNSH DAKDTSFPGG TEGSGKPVST  660
TFIKPAPAVG FQKQYDPVCD SIETKNANAW EGPPGFSPIK KIAEDAVEIL PLLSNSGRQN  720
LIQLHQGENI EANKENNEVV DEEMQISPCD NKTKKDNGPL GSMDQNGVHD EAKKKDVKGI  780
RAFKHSLVEF IKELLKPTWK EGHITKEDYK AIVKKVSDKV TGTVQRLHIP QTQEKIDHYL  840
SSSKPKLNKL VQGEVVAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-15	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW00470