PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV99929

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 365aa MW: 41072.9 Da PI: 6.605

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV99929	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.9e-08	105	129	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ G C+ G++C+FaHg OIV99929 105 FKTRMCAKFRL-GSCRNGENCTFAHG 129 69*******.***********9 PP
2	zf-CCCH	34.6	3.2e-11	165	188	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ ++ +G+C+yG+rC+F H OIV99929 165 KMKLCKKYYNGGECPYGERCNFLH 188 789********************* PP
3	zf-CCCH	41.8	1.8e-13	251	277	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G+ C+FaHg+ OIV99929 251 WKTKLCIKWETTGHCPFGEDCHFAHGQ 277 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MSFFNDLPPY IPLPPPYDAT SQTDAIVLSV EQEFPENDEP FIKRSLIDDH DHDHDYPPSF 60 NRARTTSFEI NNNNHSNAIP CPPRMVMMHP QNNNKVGTGT SHIFFKTRMC AKFRLGSCRN 120 GENCTFAHGV EDMRQPPPNW QEIVGLHGSN DAAENWDDDQ KIIHKMKLCK KYYNGGECPY 180 GERCNFLHED PAKFRDDSGR IKESSAINIG TNGSPKSYLN GYDHNNSETN KVMALSMGLN 240 AYRGNVRSTF WKTKLCIKWE TTGHCPFGED CHFAHGQSEL HVLGGRIETE ATSVIPIATY 300 ATSTTLPKFT SIPVIDVAPA PSNLASPPRA NDTAQGKKCL LKWKGTKKIN RIYGDWLEDD 360 DEPHV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MSFFNDLPPY IPLPPPYDAT SQTDAIVLSV EQEFPENDEP FIKRSLIDDH DHDHDYPPSF  60
NRARTTSFEI NNNNHSNAIP CPPRMVMMHP QNNNKVGTGT SHIFFKTRMC AKFRLGSCRN  120
GENCTFAHGV EDMRQPPPNW QEIVGLHGSN DAAENWDDDQ KIIHKMKLCK KYYNGGECPY  180
GERCNFLHED PAKFRDDSGR IKESSAINIG TNGSPKSYLN GYDHNNSETN KVMALSMGLN  240
AYRGNVRSTF WKTKLCIKWE TTGHCPFGED CHFAHGQSEL HVLGGRIETE ATSVIPIATY  300
ATSTTLPKFT SIPVIDVAPA PSNLASPPRA NDTAQGKKCL LKWKGTKKIN RIYGDWLEDD  360
DEPHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	2e-77	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV99929