PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIV94446
Organism
Lupinus angustifolius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 324aa    MW: 34821.2 Da    PI: 7.7298
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIV94446genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-107397126
              --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
              +kt+lC+ f++ GtC+y  +C+FaH+
  OIV94446 73 FKTKLCCKFRA-GTCPYVTNCNFAHS 97
              69*********.*************8 PP
2zf-CCCH18.82.9e-06143168126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               yk + C+ f+    C+yGd+C+F H+
  OIV94446 143 YKGRHCKKFYTEEGCPYGDSCTFLHD 168
               78888********************7 PP
3zf-CCCH40.25.8e-13220245126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kt++C+ +  tG+C++G++C+FaHg
  OIV94446 220 WKTRICNKWELTGHCPFGNKCHFAHG 245
               8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDHTRESNVV QIIAGGENVS PSGSGDQSVW ATEDDYRFFN NDVESTPKRS RTSQDATASS  60
SNNRSKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSIEE LRRPPPNWQE IVAAHEDDRS  120
VPPREEFQIP SLSGYSGDTQ RSYKGRHCKK FYTEEGCPYG DSCTFLHDEN SRNRESVAIS  180
LGPGGYGGGG GGGSGGGVTG SGGVTVAGGG GSSNLKPSNW KTRICNKWEL TGHCPFGNKC  240
HFAHGAAELS QHGGFVDGES RDTASAGTPA DNVAASVILV AHSAGTPSQR PSIVIQRPGQ  300
RTHKKWKGPD KISRIYGDWI DDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-112C3H family protein