PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV89377

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

NF-YC

Protein Properties

Length: 268aa MW: 29321 Da PI: 4.6315

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV89377	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.2	7.5e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl d+v r OIV89377 1 MQADEDVGKIAQAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKYCVQSYNVFDFLRDVVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MQADEDVGKI AQAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KYCVQSYNVF 60 DFLRDVVSRV PDYSHGSHSE AGGADDRAIL KRRKAAAEDC NDSDEEAKRG KMRELSHSGS 120 TGRGRGRGRG RGRGRGARTV EREAHHQEAD SEPCATVQHG SQHDTDINMA MHDGSESKEL 180 LKESLAVPVE NTESPGNIDL NANTNENEDK NASAAANASL SEPATEIKHE DIPGWSLSDL 240 DKMAIDTMQL AQLGRGLEED EEDYDGEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	132	RGRGRGRGRG
2	123	133	RGRGRGRGRGR
3	125	134	RGRGRGRGRG
4	125	135	RGRGRGRGRGR
5	127	136	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-55	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OIV89377