PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0093s0127.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18951.1 Da PI: 10.2791 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.4 | 1.2e-10 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51 i + s r +tf kR++ +KK +EL LC+++v+ i + +gk+ ++s Kaladp0093s0127.1.p 11 IPSISARITTFRKRKKSFFKKLNELKKLCEVDVCAFIKNPfDGKMEAWPS 60 5667889***************************8887665899998885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
MARRGIKLEL IPSISARITT FRKRKKSFFK KLNELKKLCE VDVCAFIKNP FDGKMEAWPS 60 DPEAKSVAER FKNALAAKKK RYGMNQESYL RKNIENFANK LEKQEKKNDD LVFDMMVNGF 120 GIEQAGLDNP EDLRRALGKK IKEVDEKIDH MSIDLNKIPS GSPLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-14 | M-type_MADS family protein |