PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0081.2.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 335aa    MW: 37216.7 Da    PI: 7.3391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0081.2.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-0885109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C  f   G C+ G++C+FaHg
  Kaladp0033s0081.2.p  85 FKTRVCAKFKL-GLCRNGENCNFAHG 109
                          69*********.*************9 PP
2zf-CCCH30.56.2e-10145168225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ f+ +  C+yGdrC+F H
  Kaladp0033s0081.2.p 145 KMKLCKKFSNGEVCPYGDRCNFLH 168
                          889*******66************ PP
3zf-CCCH31.53e-10229255127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f ++G+C++Gd+C FaHg+
  Kaladp0033s0081.2.p 229 WKTKLCCKFEANGFCSFGDKCGFAHGR 255
                          8************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MSFPESQSPF VPPGLGASSD AIQVSFWQQY SINNQDYNNN AKFQQPRPPK RPREEENQSD  60
NVVIVPQRMP SSSIPVNKGI TNIFFKTRVC AKFKLGLCRN GENCNFAHGV EDLRQPPPNW  120
QELVGGREED RGSGNWDDEQ RIALKMKLCK KFSNGEVCPY GDRCNFLHED PKRLRDDSDS  180
VRFRESSAIH IGSKVNTAAG HGSGLDLADA NLFNTGSDAY RMNVRIEHWK TKLCCKFEAN  240
GFCSFGDKCG FAHGRAELQG PVVRPEGELR SCGAFNTSMN PVVGPPNDIS SGIVDNAILN  300
EEQTGKKDFS KLKGSKKINR IYADWIDDLP LDAP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-74C3H family protein