PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0032s0051.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 687aa MW: 75283.6 Da PI: 6.4635

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0032s0051.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Kaladp0032s0051.2.p 278 PCPDFRK-GACRRGDMCEYAHG 298 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MNNLSIETDD TFASLLEFAA NNDIEGFKKW MVRAPPSTDV VGLWYIRLPG SKQLVLEQRT 60 PLMVAATYGS IDVLKLILSS SDADVNRTCG NTKSTALHCA ASGGSDNALE VVKLLLAAGG 120 DPNLADSNGR CPVDVIVVSP KSPDLKVSLQ QLLVRTSSVI EGDQAKCIPS LNSYHPVVSS 180 SPRIESPSSA FGSYSSRNAN FEEPPILCGL EKKEYLIDPT FPDIKNSIYG TDEFRMYSFK 240 IRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGIDC TRRVCFFAHT TEELRPLYVP SPHSNYSAGM DFAAAMNILP 360 GSPSSVPVMS PSPFTPPMSP SANVSPSQLS WAPSIPSLNL PGSNLQSSRL RSSINARDLQ 420 AEEFAKIGES DAQQYQLLKD LTSHYGTNSL ERPGHLKTPT PLNLEDLFVA DSLSPCYVDS 480 PFGSSVHSPT HKSALLNQFQ QQKQGILSPI NTHISANNVD HHLLQGSYGE PYSGRMSPHN 540 LERSEPISPM NSRVLMLANR EKLRSLSFRE PGTNAAALVG SPLSNWGSIS GKVDWALSSE 600 ELDKLRRSSS FDMRNSRDDP DSIWAHSPIL EPAPEIRERA STSGTWIASS NEGMSSVSSN 660 TNSLDHAALG AWLEQMQLDE LVGTSK*

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MNNLSIETDD TFASLLEFAA NNDIEGFKKW MVRAPPSTDV VGLWYIRLPG SKQLVLEQRT  60
PLMVAATYGS IDVLKLILSS SDADVNRTCG NTKSTALHCA ASGGSDNALE VVKLLLAAGG  120
DPNLADSNGR CPVDVIVVSP KSPDLKVSLQ QLLVRTSSVI EGDQAKCIPS LNSYHPVVSS  180
SPRIESPSSA FGSYSSRNAN FEEPPILCGL EKKEYLIDPT FPDIKNSIYG TDEFRMYSFK  240
IRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGIDC TRRVCFFAHT TEELRPLYVP SPHSNYSAGM DFAAAMNILP  360
GSPSSVPVMS PSPFTPPMSP SANVSPSQLS WAPSIPSLNL PGSNLQSSRL RSSINARDLQ  420
AEEFAKIGES DAQQYQLLKD LTSHYGTNSL ERPGHLKTPT PLNLEDLFVA DSLSPCYVDS  480
PFGSSVHSPT HKSALLNQFQ QQKQGILSPI NTHISANNVD HHLLQGSYGE PYSGRMSPHN  540
LERSEPISPM NSRVLMLANR EKLRSLSFRE PGTNAAALVG SPLSNWGSIS GKVDWALSSE  600
ELDKLRRSSS FDMRNSRDDP DSIWAHSPIL EPAPEIRERA STSGTWIASS NEGMSSVSSN  660
TNSLDHAALG AWLEQMQLDE LVGTSK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein