PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0015s0115.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

RAV

Protein Properties

Length: 365aa MW: 40825.5 Da PI: 7.1403

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0015s0115.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.6	1.7e-09	40	87	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV +g W A+I+ + +r++lg+f ++ eAa a++ a+ kl+ Kaladp0015s0115.1.p 40 SRFKGVV-PQISGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKLR 87 6789996.666899**999......44******99**********98 PP
2	B3	85.3	5.2e-27	179	275	1	85
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k ltpsdv+k++rlv+pkkfa ++ + + ee++ l++ d s r W+++++y+++s+++v+t+GW++Fvk++gL+++D Kaladp0015s0115.1.p 179 FSKGLTPSDVGKLNRLVIPKKFAVKFfpgimtsscessEVEDEEDVLLSFHDASMRLWKFRYCYWRSSQSFVFTRGWNRFVKDKGLRAKD 268 7899**************************99999855667999**************************************** PP EEEEEE- CS B3 79 fvvFkld 85 +++F++ Kaladp0015s0115.1.p 269 VITFSMC 275 **954 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGANCDPDDA GSVSSGGVKR ARYGSNNSAS SASAAVATTS RFKGVVPQIS GHWGAQIYAN 60 HQRIWLGTFK SEREAAMAYD SAAIKLRSSC DSHRNFPWSP VSMQEPFFQK SFTTEAVLSM 120 IKDGSYSAKL SDFLSQRQQR GEQTEDDDIN ADGSLNNNSE TIITVRSDQM EKFTCRKLFS 180 KGLTPSDVGK LNRLVIPKKF AVKFFPGIMT SSCESSEVED EEDVLLSFHD ASMRLWKFRY 240 CYWRSSQSFV FTRGWNRFVK DKGLRAKDVI TFSMCDAAAG CVNDPKPSSF YLIDVTYRQH 300 DKAAGGNEVE REDVVEREDA DGRRFHVSRS SEVVEEEKHV VDDASLKQSD KNKKWGFRLF 360 GVDI*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGANCDPDDA GSVSSGGVKR ARYGSNNSAS SASAAVATTS RFKGVVPQIS GHWGAQIYAN  60
HQRIWLGTFK SEREAAMAYD SAAIKLRSSC DSHRNFPWSP VSMQEPFFQK SFTTEAVLSM  120
IKDGSYSAKL SDFLSQRQQR GEQTEDDDIN ADGSLNNNSE TIITVRSDQM EKFTCRKLFS  180
KGLTPSDVGK LNRLVIPKKF AVKFFPGIMT SSCESSEVED EEDVLLSFHD ASMRLWKFRY  240
CYWRSSQSFV FTRGWNRFVK DKGLRAKDVI TFSMCDAAAG CVNDPKPSSF YLIDVTYRQH  300
DKAAGGNEVE REDVVEREDA DGRRFHVSRS SEVVEEEKHV VDDASLKQSD KNKKWGFRLF  360
GVDI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	5e-88	RAV family protein