PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0227.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23416.7 Da PI: 6.339 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.8e-42 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+lapyfp ++p+kf ++h++FGasn++kll++lpe +r da+ss+vyeA ar+rdPvyG++g i +lq+++++l Kaladp0001s0227.1.p 36 PCAACKILRRRCADKCILAPYFPPTEPQKFTIAHRVFGASNIIKLLQDLPEAQRADAVSSMVYEASARIRDPVYGCAGAICHLQNHVREL 125 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la+ k+e Kaladp0001s0227.1.p 126 QAQLAKSKAE 135 *****99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MEHSERSWRS SATPSPISSP SSSPPPPQKT TVIMSPCAAC KILRRRCADK CILAPYFPPT 60 EPQKFTIAHR VFGASNIIKL LQDLPEAQRA DAVSSMVYEA SARIRDPVYG CAGAICHLQN 120 HVRELQAQLA KSKAEIVNLQ AHQAQLVALI CVEVSSAQPN NNTTKTASDQ LFDCGGFFGS 180 PLAEDFYSGL GFEVESDGMG SMGWEMPLWP DMMIS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-69 | LBD family protein |