PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0097.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 24740.4 Da PI: 6.289 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.5 | 1.2e-11 | 10 | 55 | 5 | 50 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++s+++v fsk ++ K +EL +LCd++++ i+ ++++ y+++ Kaladp0001s0097.1.p 10 DDSKKTVDFSKKASTLTKQIYELTTLCDVQACFILRTPHNQTYTWP 55 6899*****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MKQLGHQNAD DSKKTVDFSK KASTLTKQIY ELTTLCDVQA CFILRTPHNQ TYTWPESVDQ 60 VGRVVGLFKS KAGTTTGKIA RDVTPDERRL KDMPTAQAEN LLKRLEDRIE ALTAKIANAE 120 GGDDITKIGS NPDGGEIMKR FSFKEKLKEL TAGQAMTLSS ELDAKIEALT TKIDNGEGRH 180 AKSTIAGNND KGMNPAVDMD CSADNDDSWT XXXXXXXXXX GAKSVV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31630.1 | 1e-08 | M-type_MADS family protein |