PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019199881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 29165.7 Da PI: 8.1917 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.9 | 8.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ XP_019199881.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 102.2 | 7e-34 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 y++++ +s++++ + s++ e+akLk+++e Lqr+qRh+ GedL+sLslkeLq+Le+qL+++lk+iRskKn+l++e+i+ lqkk k+lq++n++L+ XP_019199881.1 75 YAERQLNSTDQNSQGSWTLEHAKLKARMEVLQRNQRHYEGEDLDSLSLKELQNLERQLDSALKNIRSKKNQLMYESISVLQKKDKALQDQNNQLS 169 677889999999999******************************************************************************** PP K-box 96 kklee 100 kk++e XP_019199881.1 170 KKIKE 174 **987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATE 60 SCMEKILERY ERYSYAERQL NSTDQNSQGS WTLEHAKLKA RMEVLQRNQR HYEGEDLDSL 120 SLKELQNLER QLDSALKNIR SKKNQLMYES ISVLQKKDKA LQDQNNQLSK KIKEREKEMA 180 TQQQQQQEVQ WEQPNDDINS SYVVPPPLVH LSSEGEYQGE GEYGETEGTQ RQQQNNTSAM 240 PQWMLSHLQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-98 | MIKC_MADS family protein |