PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199481.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 361aa    MW: 40695.3 Da    PI: 7.8331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07135155526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C+ Gd C +aHg
  XP_019199481.1 135 ACPEFRK-GNCRKGDACEYAHG 155
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MMIGEKYYSN QRVHVSPWPY RHDLTVDVHS ALSTNGNGNS NEDFSPLQND DAALKALMRY  60
LPSNSNDVVG MDDNERDVDL PVDAYSSCDH FRMYDFKVRR CARGRSHDWT ECPYAHPGEK  120
ARRRDPRKYH YSGTACPEFR KGNCRKGDAC EYAHGVFECW LHPARYRTQP CKDGLSCRRR  180
VCFFAHAPEQ LRVLSPRAEW YNSYEGSCES GSPPSESPPM SPSVNSLSRS HGSNSVNGLV  240
ASMRQIQLNK VNSMPSSWKV QIGSPRPGST RARPGFCSLP ATPTQSVGRP GLCYFDLWER  300
GLGKEEAPME RVESGRDLRA KMFERIGKEN PLDGENSSPN PHPTQVDTPN PDFGWVSDLV  360
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-112C3H family protein