PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019199473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 20965.5 Da PI: 8.3042 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 223.7 | 5.1e-69 | 10 | 164 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++se+vCyv+CnfC+tilavsvP +s+f++vtvrCGhC++llsvn+ q l+ +++ +++++++++e+ + +++s+s+ ++ XP_019199473.1 10 STTSERVCYVHCNFCTTILAVSVPCSSMFTIVTVRCGHCANLLSVNMGSLLQPLPLHQD--------IQKQQQSNNEDGS---GSSSSSSKCNKF 93 5789******************************************9999999998876........3333333332222...222333333344 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ e+e+ pr p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_019199473.1 94 APFDSPEHEQQPRLAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 4567788888999999.9****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MDISSSSSSS TTSERVCYVH CNFCTTILAV SVPCSSMFTI VTVRCGHCAN LLSVNMGSLL 60 QPLPLHQDIQ KQQQSNNEDG SGSSSSSSKC NKFAPFDSPE HEQQPRLAPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLNLDNNK QAKIDHAVGG 180 EGPQKSLGLY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-73 | YABBY family protein |