PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199327.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 303aa    MW: 33670.2 Da    PI: 9.2626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.6e-18219252134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_019199327.1 219 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 252
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MSMVEPGHWD GIATGANGGY DNFHDLLSIL DFPMESLEGD GFNDDWDANL QCLGPIPSDA  60
LMGLQPVPQL YTGNGSLGVT IKSEASVDNI SRQNQLLNYG EKASGAALLC PDKYSDHKSG  120
MFQTQTPTRI SENRALYLGK MIEAIKSNFI VPVGTRSKRM RCSKFKPWHF ISASTKKKRE  180
RKLSQRSIAA KDIRNPQANQ AASDPCEQKG RQSFPVKKCL HCEVTKTPQW REGPMGPKTL  240
CNACGVRYRS GRLFPEYRPA ASPTFVPSLH SSSHKEVTEM RRKAGEEGVT HGECQPWLRT  300
HTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-44GATA family protein