PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019199127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WOX | ||||||||
Protein Properties | Length: 216aa MW: 24814.4 Da PI: 9.886 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.4e-18 | 9 | 70 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql +L+el+++ r+p+ + + ++++l ++++++V++WFqN++a++++ XP_019199127.1 9 RPRRWSPTPEQLMVLQELYRRgLRNPNGFQVRTITSHLalygKIETKNVFYWFQNHKARDRQ 70 568*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 101.6 | 5.6e-33 | 11 | 71 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 RW+PtpeQ+++L+ely++Glr+Pn +++ it++L+ yGkie kNVfyWFQN+kaR+rq+ XP_019199127.1 11 RRWSPTPEQLMVLQELYRRGLRNPNGFQVRTITSHLALYGKIETKNVFYWFQNHKARDRQR 71 6***********************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MVGGEVTCRP RRWSPTPEQL MVLQELYRRG LRNPNGFQVR TITSHLALYG KIETKNVFYW 60 FQNHKARDRQ RLRKTLIKQH LRYRPVFARQ EEPQQPAHSA AQVQNCCHHQ LLDGRSSLDF 120 CSAFSDHLSP RFSTFLHQGG GGEKIVNMGV PTSSCDDAGS SMTTRMFDRD WMMLMETRSC 180 VPRWVDRTPI TLQLFPLQAT NIKAESTTIS TPVSSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-36 | WOX family protein |