PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199011.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 355aa MW: 40074.4 Da PI: 7.501

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	186	205	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_019199011.1 186 FACNICSKTFNRYNNMQMHM 205 78*****************9 PP
2	zf-C2H2	17	1.7e-05	270	292	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F k + ++H +++ XP_019199011.1 270 FTCRKCGKTFAVKGDWRTHEKNC 292 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGIRNCHIQA AGLNLCFQAP TFIEWLKPSS SSSSSSSSAI SPQLLLIHQP SGNKNDTMSF 60 LKFPAVIETP HQLQERVDDH DEETLQCLPL LSKLMEAKGG GVKEEERDDD EEEEEEKVAV 120 ALHIGLPDSG GEEAKPINVF KAEEEESVKK RRRAVVVDGD NGCKFNSESR FWIPTPTQIL 180 VGPMQFACNI CSKTFNRYNN MQMHMWGHGS EFRKGPESLR GTQPAAMLRL PCYCCAAGCK 240 NNINHPRAKP LKDFRTLQTH YKRKHGSKPF TCRKCGKTFA VKGDWRTHEK NCGKLWYCTC 300 GSDFKHKRSL KDHIRSFGKG HSPHPSLEGF EDEKEELMMT DEEETHSKSG NSYLL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGIRNCHIQA AGLNLCFQAP TFIEWLKPSS SSSSSSSSAI SPQLLLIHQP SGNKNDTMSF  60
LKFPAVIETP HQLQERVDDH DEETLQCLPL LSKLMEAKGG GVKEEERDDD EEEEEEKVAV  120
ALHIGLPDSG GEEAKPINVF KAEEEESVKK RRRAVVVDGD NGCKFNSESR FWIPTPTQIL  180
VGPMQFACNI CSKTFNRYNN MQMHMWGHGS EFRKGPESLR GTQPAAMLRL PCYCCAAGCK  240
NNINHPRAKP LKDFRTLQTH YKRKHGSKPF TCRKCGKTFA VKGDWRTHEK NCGKLWYCTC  300
GSDFKHKRSL KDHIRSFGKG HSPHPSLEGF EDEKEELMMT DEEETHSKSG NSYLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-120	C2H2 family protein