PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198848.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 477aa MW: 52529.7 Da PI: 8.5204

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.3e-17	157	206	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_019198848.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 206 78*****************......55**********************997 PP
2	AP2	36.8	1e-11	249	299	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + g +k+ +lg + ++ eAa+a+++a+ k +g XP_019198848.1 249 SKYRGVTLHK-CGRWEAR---MGQlAG-KKYMYLGLYNSEVEAARAYDKAAIKCYG 299 89******.7**...533333.7******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MHAHTRKQRD MLLEDLNVDA VFYMDSACDE SDPDPCGRVT ASLNGGDDSG TSNTASSSSV 60 VNADDPPSSP STLAFSILKT SQVIEVEDGR NEAASVVASR QLLPVTREPF FSSHQNWLKL 120 SAPETGRGAE VGTFEPPYPQ PCQPIKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 180 QVYLGGFDTA HSAARAYDRA AIKFRGVDAD INFHLSDYEE DMKQMKNLNK EEFVQILRRQ 240 STGFSRGSSK YRGVTLHKCG RWEARMGQLA GKKYMYLGLY NSEVEAARAY DKAAIKCYGR 300 EAMTNFEPSA YEGEMNKNTR DGGTICPMDV GTNASLDLNL WISPPLDGPK RPENARKLQF 360 NFEARDLSLL KRVKVECTPG TPYGPAMASQ YSRWPGLQSA LTPNNEEGLM GTNAEASSPV 420 FSNLRWLSQG VAPSAPRFSS AASSGFSSTA TSMFKFPSAA PPPSAASQNH LMTLRPN

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MHAHTRKQRD MLLEDLNVDA VFYMDSACDE SDPDPCGRVT ASLNGGDDSG TSNTASSSSV  60
VNADDPPSSP STLAFSILKT SQVIEVEDGR NEAASVVASR QLLPVTREPF FSSHQNWLKL  120
SAPETGRGAE VGTFEPPYPQ PCQPIKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HSAARAYDRA AIKFRGVDAD INFHLSDYEE DMKQMKNLNK EEFVQILRRQ  240
STGFSRGSSK YRGVTLHKCG RWEARMGQLA GKKYMYLGLY NSEVEAARAY DKAAIKCYGR  300
EAMTNFEPSA YEGEMNKNTR DGGTICPMDV GTNASLDLNL WISPPLDGPK RPENARKLQF  360
NFEARDLSLL KRVKVECTPG TPYGPAMASQ YSRWPGLQSA LTPNNEEGLM GTNAEASSPV  420
FSNLRWLSQG VAPSAPRFSS AASSGFSSTA TSMFKFPSAA PPPSAASQNH LMTLRPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-94	AP2 family protein