PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198449.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 316aa    MW: 34000.2 Da    PI: 6.7693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18233266134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_019198449.1 233 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 266
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MDSNFVDEID CGSFFDHIDD LIDFPPENEC GGVGSGDCAN FPSIWDEPLP DSDPIFSAAH  60
SHSASDLSAE LSVPYEDIVQ LEWLSAFVEE SFSDGGLTLG KENYPLNPKP ESDKKFQAAS  120
SPISVLESSS SSSSSSNSSC SGGKAMPLSP SQRGAQRARS KRPRPVAFNP RPVMQLIETP  180
QVESFADSPA KKVPRPPAGA GEQKKKKKIK FSMPALPNPG APNQDQGGAV RKCMHCEITK  240
TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV PSLHSNSHKK VVEMRTKAVP  300
SLEQSPVSSV APPEIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-41GATA family protein