PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019198288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22083.2 Da PI: 9.7611 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.1 | 1.3e-24 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rie+++ r+vtfskRrng++KKA+E+S+LC++e++++ifss++k y++s+ XP_019198288.1 20 SRIESETSRSVTFSKRRNGLIKKANEISTLCGVEILLVIFSSSDKAYTFSN 70 59***********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MSSNNANRRV GRGRQRIPLS RIESETSRSV TFSKRRNGLI KKANEISTLC GVEILLVIFS 60 SSDKAYTFSN PGMDAILTKY FGANPTAQPN PAEQNLRAHR ESLMQIMSSQ INYLEMQIEE 120 EMKVNQALRE AEKVNPPISE LPLSELPSMK HKMEMLRSLV LQKLMQVPGQ AHLDTSILFG 180 YSQFGANDNV GPSGGASAQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-24 | M-type_MADS family protein |