PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198127.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 330aa MW: 37240.4 Da PI: 4.916

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k XP_019198127.1 89 KKRRLTGDQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 142 56689************************************************9 PP
2	HD-ZIP_I/II	128.8	2.2e-41	88	178	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLeperKv+la+eLglqprq+a+WFqnrRAR+k kqlEkdy+ Lk++yd lk++ ++L ke+++L++e+ XP_019198127.1 88 EKKRRLTGDQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKGKQLEKDYDGLKARYDDLKAKYDSLLKEKDSLKAEV 178 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MEAGRGLFYG AGAGAGDSSF NTLFLQNQRL PFQSSKEPLL TPGFSPSFHG SGSSSMVSFC 60 DGKGGFFRKY DQDENECENS DEYFLQPEKK RRLTGDQVQF LEKSFEVENK LEPERKVQLA 120 KELGLQPRQI AIWFQNRRAR WKGKQLEKDY DGLKARYDDL KAKYDSLLKE KDSLKAEVLR 180 VTDKLVVKGK EKETLKFRDD IQHPLEALSK DHMADSVAAS SPALPVKLEG TSPSKSDVLD 240 SDSPRYTDGV HSSFPDIGGD SSYVFEPERS DSDLSQDEDD RFSKNFMAAS ESLSVFPKVR 300 EDHYPIAIPP TNSSLYGFPV EDQTFGFWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARWKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-48	HD-ZIP family protein