PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197807.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 388aa MW: 43608 Da PI: 7.1884

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.3e-50	29	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i ++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+s XP_019197807.1 29 MFPGFRFSPTDEELISYYLKKKLEGSDRCV-EVISEVEIWRHEPWDLPvKSVIQSDNEWFFFSPRGRKYPNGSQSRRATESGYWKATGKERNVKS 122 579**********************777.99***********767777899********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf++grapkg++t+W+mhey + XP_019197807.1 123 -GSNVIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 155 .99***************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MDDGHASSSR NINNNNSTTE IPLATASAMF PGFRFSPTDE ELISYYLKKK LEGSDRCVEV 60 ISEVEIWRHE PWDLPVKSVI QSDNEWFFFS PRGRKYPNGS QSRRATESGY WKATGKERNV 120 KSGSNVIGTK RTLVFHTGRA PKGQRTQWIM HEYCMNGTRS QPQDSMVVCR LRKNNEFHLN 180 EAPRNQMNDS NANNCMTALS GADPAGSSGG VNAGESCSKE CSSSFNSHSV EQIDSGSDSD 240 EKLVNEISLH HPPGHQKDFF DAEDWFADIM KDDIVKLDDS SLNPRLDALP ATTTKPEPEP 300 QQNQATMAAQ GFTPDLFPFQ GTANRRLRLR KEAVGFSEAA RGEVLPRCLV SMMSRGRMKR 360 CSIYVCFLSL IILLFCCSAL IYFFIWRI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MDDGHASSSR NINNNNSTTE IPLATASAMF PGFRFSPTDE ELISYYLKKK LEGSDRCVEV  60
ISEVEIWRHE PWDLPVKSVI QSDNEWFFFS PRGRKYPNGS QSRRATESGY WKATGKERNV  120
KSGSNVIGTK RTLVFHTGRA PKGQRTQWIM HEYCMNGTRS QPQDSMVVCR LRKNNEFHLN  180
EAPRNQMNDS NANNCMTALS GADPAGSSGG VNAGESCSKE CSSSFNSHSV EQIDSGSDSD  240
EKLVNEISLH HPPGHQKDFF DAEDWFADIM KDDIVKLDDS SLNPRLDALP ATTTKPEPEP  300
QQNQATMAAQ GFTPDLFPFQ GTANRRLRLR KEAVGFSEAA RGEVLPRCLV SMMSRGRMKR  360
CSIYVCFLSL IILLFCCSAL IYFFIWRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	331	RRLRLRK
2	325	332	RRLRLRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	5e-83	NAC family protein