PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197806.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 389aa MW: 43679.1 Da PI: 7.1884

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.3	7.5e-50	29	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i ++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+sgyWkatgk+++v+ XP_019197806.1 29 MFPGFRFSPTDEELISYYLKKKLEGSDRCV-EVISEVEIWRHEPWDLPavKSVIQSDNEWFFFSPRGRKYPNGSQSRRATESGYWKATGKERNVK 122 579**********************777.99***********5335556899*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+k+tLvf++grapkg++t+W+mhey + XP_019197806.1 123 S-GSNVIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 156 .99****************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MDDGHASSSR NINNNNSTTE IPLATASAMF PGFRFSPTDE ELISYYLKKK LEGSDRCVEV 60 ISEVEIWRHE PWDLPAVKSV IQSDNEWFFF SPRGRKYPNG SQSRRATESG YWKATGKERN 120 VKSGSNVIGT KRTLVFHTGR APKGQRTQWI MHEYCMNGTR SQPQDSMVVC RLRKNNEFHL 180 NEAPRNQMND SNANNCMTAL SGADPAGSSG GVNAGESCSK ECSSSFNSHS VEQIDSGSDS 240 DEKLVNEISL HHPPGHQKDF FDAEDWFADI MKDDIVKLDD SSLNPRLDAL PATTTKPEPE 300 PQQNQATMAA QGFTPDLFPF QGTANRRLRL RKEAVGFSEA ARGEVLPRCL VSMMSRGRMK 360 RCSIYVCFLS LIILLFCCSA LIYFFIWRI

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MDDGHASSSR NINNNNSTTE IPLATASAMF PGFRFSPTDE ELISYYLKKK LEGSDRCVEV  60
ISEVEIWRHE PWDLPAVKSV IQSDNEWFFF SPRGRKYPNG SQSRRATESG YWKATGKERN  120
VKSGSNVIGT KRTLVFHTGR APKGQRTQWI MHEYCMNGTR SQPQDSMVVC RLRKNNEFHL  180
NEAPRNQMND SNANNCMTAL SGADPAGSSG GVNAGESCSK ECSSSFNSHS VEQIDSGSDS  240
DEKLVNEISL HHPPGHQKDF FDAEDWFADI MKDDIVKLDD SSLNPRLDAL PATTTKPEPE  300
PQQNQATMAA QGFTPDLFPF QGTANRRLRL RKEAVGFSEA ARGEVLPRCL VSMMSRGRMK  360
RCSIYVCFLS LIILLFCCSA LIYFFIWRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	332	RRLRLRK
2	326	333	RRLRLRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	2e-81	NAC family protein