PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196999.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 366aa MW: 40127.2 Da PI: 10.3325

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.5e-14	62	150	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e+ +l+rg+lk+++W+++++ + ++ +s +qCk++++ ++k++k +k+ + ++ s++++fd+++ XP_019196999.1 62 CWSESATAVLIEAWGERYLELSRGNLKQTHWKDIAEIVngqggDFTKTPKSDIQCKNRIDTVKKKFKLEKAKISAGH--GPSRWAFFDKMD 150 7***********************************885555555666778**************999984..5557*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MEDNEEMRSQ SSKDTASPAS PRSDGRIAVT VAVSAPPSTK AVAVALPVQQ QSKPAGGGRE 60 DCWSESATAV LIEAWGERYL ELSRGNLKQT HWKDIAEIVN GQGGDFTKTP KSDIQCKNRI 120 DTVKKKFKLE KAKISAGHGP SRWAFFDKMD WLIGPAAKIN NAAGSGGGYE PPANTGNHKV 180 PMGIPMGARS APPLRQHQPS PPPPQKQKQA FQKPPPAYSD SSDSETEVSA DSLPPATNDR 240 KRPRGFMNSS FVKPEMQRAT GTGIGEKHQN WGKSIGELSE AILKFGEAYE RTESARIQQM 300 VEIEKQRMKF AKEMELQRMQ FFMKTQMDLS QLHNRSRPIK KANNNKNTAA AATIKNSNNI 360 SSGNIN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MEDNEEMRSQ SSKDTASPAS PRSDGRIAVT VAVSAPPSTK AVAVALPVQQ QSKPAGGGRE  60
DCWSESATAV LIEAWGERYL ELSRGNLKQT HWKDIAEIVN GQGGDFTKTP KSDIQCKNRI  120
DTVKKKFKLE KAKISAGHGP SRWAFFDKMD WLIGPAAKIN NAAGSGGGYE PPANTGNHKV  180
PMGIPMGARS APPLRQHQPS PPPPQKQKQA FQKPPPAYSD SSDSETEVSA DSLPPATNDR  240
KRPRGFMNSS FVKPEMQRAT GTGIGEKHQN WGKSIGELSE AILKFGEAYE RTESARIQQM  300
VEIEKQRMKF AKEMELQRMQ FFMKTQMDLS QLHNRSRPIK KANNNKNTAA AATIKNSNNI  360
SSGNIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-83	Trihelix family protein