PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195504.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 679aa MW: 75309.1 Da PI: 7.1314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+ F ++ n++rH r+H XP_019195504.1 76 HKCEKCSLEFCSPVNYRRHTRLH 98 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MPVAKLSTFG APGAMKSDEG NDSLDTFIRQ AIGKEPLLSF SRTGDSPVQW IQLLHALDQP 60 DLPGWPLLTP LKVQMHKCEK CSLEFCSPVN YRRHTRLHRR ALNFDKESRK YRDLLGAFWD 120 KLLLEEVKEV ASLDDVSLKE IPGASLVMSL TSFLHKPGVW ALPSVYVKAG STLSEIIQAK 180 PSRLPISSKE LFSILDEASE RTFLCAGTAE SVQKYIFDGE VAKVGLDLKN LIACTCFLFE 240 QKLVKSWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLEKK RQKKLRQKEQ KARDQTDEGK 300 VDVSITADSL DDPVVVEISS PPAPSDSNSS TLDDISSSVE MICFSNIDIE IEAQEISNEH 360 FGPGTVQSVE PLHVSANNQR QISNGHWWQV QKSQRVGRNG FFSSRDHQAL KPEPVHKYAT 420 PKDRGPVVNN GKVWTRKVRV ENVEGLRPLL QKEAINQTQC DSEVIIGSIS VPVKNSIARQ 480 LENNLAEAQD HCGNRHYTLS KKHDVAETRI RNDITQCSTL RATNKHWRPV SRHEIGRLDK 540 EEGLSAKVDD CTVPSENGLQ SCGVDNAENN HSCQLSDGNA HAEGLLISSN AVKAFLSQRW 600 KEAIAADHVT LVLSPDPEPP GCLNAQSDTP EATPPTSNFQ AHTTGSGAIS SFYAGNPKGK 660 STTKPEKSIK KKYIPKQKN

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MPVAKLSTFG APGAMKSDEG NDSLDTFIRQ AIGKEPLLSF SRTGDSPVQW IQLLHALDQP  60
DLPGWPLLTP LKVQMHKCEK CSLEFCSPVN YRRHTRLHRR ALNFDKESRK YRDLLGAFWD  120
KLLLEEVKEV ASLDDVSLKE IPGASLVMSL TSFLHKPGVW ALPSVYVKAG STLSEIIQAK  180
PSRLPISSKE LFSILDEASE RTFLCAGTAE SVQKYIFDGE VAKVGLDLKN LIACTCFLFE  240
QKLVKSWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLEKK RQKKLRQKEQ KARDQTDEGK  300
VDVSITADSL DDPVVVEISS PPAPSDSNSS TLDDISSSVE MICFSNIDIE IEAQEISNEH  360
FGPGTVQSVE PLHVSANNQR QISNGHWWQV QKSQRVGRNG FFSSRDHQAL KPEPVHKYAT  420
PKDRGPVVNN GKVWTRKVRV ENVEGLRPLL QKEAINQTQC DSEVIIGSIS VPVKNSIARQ  480
LENNLAEAQD HCGNRHYTLS KKHDVAETRI RNDITQCSTL RATNKHWRPV SRHEIGRLDK  540
EEGLSAKVDD CTVPSENGLQ SCGVDNAENN HSCQLSDGNA HAEGLLISSN AVKAFLSQRW  600
KEAIAADHVT LVLSPDPEPP GCLNAQSDTP EATPPTSNFQ AHTTGSGAIS SFYAGNPKGK  660
STTKPEKSIK KKYIPKQKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	EKKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-116	C2H2 family protein