PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195167.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 468aa    MW: 52543.8 Da    PI: 5.464
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3366.7e-103874674374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 
                      Ll++A+av+++++ ++++l++ l+e++sp+gd+ q+la yf++AL +r+++s+++ +++ ++ +++ + s e++  + l f+evsP+ +f+h++
  XP_019195167.1  87 ILLDAARAVADKNTPRVRHLIWMLNEISSPYGDTDQKLAYYFLQALFSRITDSGERNCRKSASASEK-NCSFESTRKTALkFQEVSPWTTFGHVA 180
                     79**************************************************887766544333332.2344444444446************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak 184
                     +N aI++a++ge+++Hi+D++ + ++QWp++l++La+R+++pp+lR+T+v+  ++g         ++ +ee+g+r++kfA+ +gvpf+fnv++++
  XP_019195167.1 181 CNGAIMDAIDGESKIHIVDISNTFCTQWPTFLESLATRTDDPPRLRLTTVVVRKPGgghgppaaVQTVMEEIGSRMEKFARLMGVPFKFNVVYHT 275
                     ***************************************************99998999**999999************************9777 PP

            GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh....nsesFlerflealeyysalfdsleak 274
                      +l+++++ +L+v+++EalaVn+v +lh++       +s+r ++++++++l+P+v++vve+ea++    ++++F ++f e+l+++ + f++le++
  XP_019195167.1 276 gDLSEFDILALNVEEDEALAVNCVGALHSVA------DSRRGHLISTFRRLQPRVLTVVEEEANLdvgvDGSDFITGFQECLRWFRVYFECLEES 364
                     7*****************************8......677899*******************8873222567*********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkd 364
                     +p++s+er ++Er+  gr++v++vac  +e++er+et+++W++rl++ GF+p+++s+++ +++++llr++  +g++++     e+s+ ++l Wkd
  XP_019195167.1 365 FPKTSNERLMLERQ-AGRAVVDLVACPPSESVERRETAARWSRRLHAGGFSPASYSDEVCDDVRALLRRYR-EGWSMQgqcsgESSAGIFLSWKD 457
                     **************.*******************************************************9.88888777887889999****** PP

            GRAS 365 rpLvsvSaWr 374
                     +p+v++S+W+
  XP_019195167.1 458 QPVVWASVWK 467
                     *********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MDDMFLPLLT LQHSDQSFNS SRTSATSRSS QQQCFTPVFM DNNNEDDFSS SSYNPHHFSG  60
NYSHRYQTPI DHFLGLDSGS SFSGDDILLD AARAVADKNT PRVRHLIWML NEISSPYGDT  120
DQKLAYYFLQ ALFSRITDSG ERNCRKSASA SEKNCSFEST RKTALKFQEV SPWTTFGHVA  180
CNGAIMDAID GESKIHIVDI SNTFCTQWPT FLESLATRTD DPPRLRLTTV VVRKPGGGHG  240
PPAAVQTVME EIGSRMEKFA RLMGVPFKFN VVYHTGDLSE FDILALNVEE DEALAVNCVG  300
ALHSVADSRR GHLISTFRRL QPRVLTVVEE EANLDVGVDG SDFITGFQEC LRWFRVYFEC  360
LEESFPKTSN ERLMLERQAG RAVVDLVACP PSESVERRET AARWSRRLHA GGFSPASYSD  420
EVCDDVRALL RRYREGWSMQ GQCSGESSAG IFLSWKDQPV VWASVWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-180GRAS family protein