PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195004.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 203aa    MW: 22584.2 Da    PI: 10.2664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213153123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++Cgk F +      H+r+H
  XP_019195004.1 31 YLCQKCGKGFGSMKAVYGHMRVH 53
                    56*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MNQEKVAKLY VVGDDGGGDI GGFRFASKDD YLCQKCGKGF GSMKAVYGHM RVHSKRPKIL  60
PQEQPHRPVP KKPSTTMGLK ISELPVVSEF DEVEEVAACL MMLSRGARRS YNGENKTVVV  120
NGDDGKRRGF IRADEFEKVN NVKMGWGFKK SKVKKECVNS TGGKYKVHKC SICFKAFASG  180
QTLGGHRRHC FMKSKVIKEN LAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-15C2H2 family protein