PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194987.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 298aa    MW: 33483.8 Da    PI: 6.5977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-174390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv ++++ G g+W++ ++  g+ R++k+c++rw +yl
   XP_019194987.1 43 KGAWTAEEDKILVAYITKNGHGNWRSLPKLAGLLRCGKSCRLRWTNYL 90
                     79******************************99************97 PP
2Myb_DNA-binding49.21.2e-1596141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE + ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_019194987.1  96 RGQFSSEEVDAIIQLHTVLGNK-WSVIASHLP-GRTDNDIKNFWNSHL 141
                      899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MKNTTSLIFF LLSCYQGEEW KEGRTEEAIM GRTPCCNKEG LRKGAWTAEE DKILVAYITK  60
NGHGNWRSLP KLAGLLRCGK SCRLRWTNYL RPGIKRGQFS SEEVDAIIQL HTVLGNKWSV  120
IASHLPGRTD NDIKNFWNSH LRKQRSDPNH QNHPIPHPHG NIDEKVQWES VSVAPSLLDL  180
PPASKMDRDP FLRLWNSEVG EAFCGFKKPF GVPCQSPVSS SSKFESSSGI TLHSQPAASK  240
LLSSADTVEE EEEEDTKSYE LIDPSETTLK ILLDFPPVVN DMGFFQGPGD NLSIYLQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-68MYB family protein