PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194126.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 428aa    MW: 46125.7 Da    PI: 6.3193
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.7e-17338371134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_019194126.1 338 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 371
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MIGKRCGTRV RNQEGGGGGG EVEEDLNITT AREKESEIHT ASSEARASPT VPHSLFPLFS  60
FLLLSLFSFT SPIASSSPSL VPLSSSTTLQ GSMGSNFMDE LDCGSFFDHI DDLIEFPPEN  120
ECVGGVGSGE FKNFPSIWND PLPDSEPLFS GSHNNSAADL SAELSVPYED IIQLEWLSTF  180
VEDSFSGGGM TLGKENTPVN VEPPHNKFQT SSPVSVLESS SSSSSSSSCS GGKTTIPLSP  240
SRCGVQRARS KRPRPATFNP RPAIQLISPT SSFTEAPQPF VAPAVSSESE NFAESPMKKL  300
TTRPEAPEQK KKKKIKFTIP IAPVDTNQNQ PPQAIRKCLH CEITKTPQWR AGPMGPKTLC  360
NACGVRYKSG RLFPEYRPAA SPTFTPSLHS NSHKKVIEMR SKVGVENTAI TEAPSTPQPA  420
FNNPSVEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-41GATA family protein