PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193987.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 1050aa MW: 116786 Da PI: 6.5772

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.6	5e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L++gD v+F + +++ XP_019193987.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QEIVSRDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLCAGDAVLFIR--DEK 217 99***************************9555444.38**********************************************4..466 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l++++ r+ XP_019193987.1 218 SQLLLGIKRA 227 6678888765 PP
2	Auxin_resp	122.6	2.9e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+ eFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_019193987.1 252 AAHAAANNSPFTIFYNPRASPCEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence
MKVPSNGYIA NTGEGERKVI NSELWHACAG PLVSLPAVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPNYPNL PSKLICMLHN VTLHADPESD EVYAQMTLQP VNKYDQEALL ISDMGLKQSR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVSRD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFVS SKRLCAGDAV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPCEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP 360 FYICPPPFFR PKFPRQPGFM GDESDMENVF RRGMPWIGDE FGGLKDASSS MFPGLSLVQW 420 MSMQQQTNQQ VPAQSGLNQN QNQNALQGNL GVDNHSRLLN FQSPGFAAQN LQFNKPNQLN 480 QQVSQLQQTP SPTWPPQQQQ QPQMQLQQHP LQQLQQNMHS SSLSNGVVPS QIPNQSHPQT 540 AMHSQLQQQQ QQLMTGNLQV PQNPPAAASK PPFPQTSLPQ ELPFQQQIDQ QQSVLLHKPQ 600 QQQQQTQLQQ APLQLLQQSL MQRPQSHQSS HPSLSEHQLQ LQMLQKLQQQ QQQQQQHLLS 660 PVGSNLEPMP QQVLQQNRQS QPPPLPQQPL GSNSFSTSPL LQSPKYPVNQ PQGQQKPPIT 720 TIKAHSGLTD GDTRLRSTSP STNNCPVFPS NFLNRNQQPP TILLDDSIVD PSSNMVQELC 780 TKSDIPIKHE LPISKGTEQP KYKGNGTDNL DATSSATSYC LDASGLQQNF SLPGFCLDGD 840 VQSHSRNSMP SAANIDALAP DALLSRGYDS GKDMQNLFSN YGNSPRDIET ELSTAGINSQ 900 TFGVPDMSFK AGCSNDVTIN EPGVLNGGLW PNQTPRMRTY TKVQKRGSVG RTIDVTRYKG 960 YDELRQDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWDEFVS CVQSVKILSA 1020 AEVQQMSLDG DLGPGPNQAC SGTDSGGAWR

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence

MKVPSNGYIA NTGEGERKVI NSELWHACAG PLVSLPAVGS LVVYFPQGHS EQVAASMQKE  60
TDGIPNYPNL PSKLICMLHN VTLHADPESD EVYAQMTLQP VNKYDQEALL ISDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQEIVSRD LHDQTWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLCAGDAV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPCEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP  360
FYICPPPFFR PKFPRQPGFM GDESDMENVF RRGMPWIGDE FGGLKDASSS MFPGLSLVQW  420
MSMQQQTNQQ VPAQSGLNQN QNQNALQGNL GVDNHSRLLN FQSPGFAAQN LQFNKPNQLN  480
QQVSQLQQTP SPTWPPQQQQ QPQMQLQQHP LQQLQQNMHS SSLSNGVVPS QIPNQSHPQT  540
AMHSQLQQQQ QQLMTGNLQV PQNPPAAASK PPFPQTSLPQ ELPFQQQIDQ QQSVLLHKPQ  600
QQQQQTQLQQ APLQLLQQSL MQRPQSHQSS HPSLSEHQLQ LQMLQKLQQQ QQQQQQHLLS  660
PVGSNLEPMP QQVLQQNRQS QPPPLPQQPL GSNSFSTSPL LQSPKYPVNQ PQGQQKPPIT  720
TIKAHSGLTD GDTRLRSTSP STNNCPVFPS NFLNRNQQPP TILLDDSIVD PSSNMVQELC  780
TKSDIPIKHE LPISKGTEQP KYKGNGTDNL DATSSATSYC LDASGLQQNF SLPGFCLDGD  840
VQSHSRNSMP SAANIDALAP DALLSRGYDS GKDMQNLFSN YGNSPRDIET ELSTAGINSQ  900
TFGVPDMSFK AGCSNDVTIN EPGVLNGGLW PNQTPRMRTY TKVQKRGSVG RTIDVTRYKG  960
YDELRQDLAR MFGIEGQLED PQRTEWKLVY VDHENDILLV GDDPWDEFVS CVQSVKILSA  1020
AEVQQMSLDG DLGPGPNQAC SGTDSGGAWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein