PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019193941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 410aa MW: 44528.6 Da PI: 8.6813 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 54 | 78 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ rtG C++G++C+F+H+ XP_019193941.1 54 GEPDCSYYIRTGLCRFGASCRFNHP 78 6899********************8 PP | |||||||
2 | zf-CCCH | 37.9 | 3e-12 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++CkF+H++ XP_019193941.1 100 QPECQYYLKTGACKFGATCKFHHPR 124 799********************96 PP | |||||||
3 | zf-CCCH | 39.2 | 1.2e-12 | 148 | 170 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++rtG+Ck+G++CkF+H++ XP_019193941.1 148 ECPYYMRTGQCKFGSTCKFHHPQ 170 6********************97 PP | |||||||
4 | zf-CCCH | 38.8 | 1.6e-12 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_019193941.1 299 PGQPECQFYMKTGDCKFGAVCKFHHPR 325 5789*********************96 PP | |||||||
5 | zf-CCCH | 38.5 | 2e-12 | 345 | 371 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_019193941.1 345 PGEPLCAFYSRYGICKFGPSCKFDHPM 371 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence |
MMDFEAAAGI SASMASVTEG PSSLSPPLAQ ETLWQLSLRS METMESGTYP VRDGEPDCSY 60 YIRTGLCRFG ASCRFNHPSN RKLAIAAARM KGEYPERVGQ PECQYYLKTG ACKFGATCKF 120 HHPRDKAGIA GRVALNVLGY PLRPNDIECP YYMRTGQCKF GSTCKFHHPQ PSNMMVPLRG 180 SPAYPPVHSP TTPGQLSYPL SRASFITNPR WQGPSSYTPL IVPQGVVSVP GFAYSGQLGS 240 VSSPESQQLT VGNSQAYGLS RSSEVANVGS QGMNPSYRAG TLPMGYYALQ RENVFPERPG 300 QPECQFYMKT GDCKFGAVCK FHHPRERLIP PPDSLLSPIG LPLRPGEPLC AFYSRYGICK 360 FGPSCKFDHP MGVFTYNISP SSTTNAPTVR HFLGSSSGTG TLTLSSEGAC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-164 | C3H family protein |