PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192664.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 372aa    MW: 41461 Da    PI: 6.7168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06130150526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C+ Gd C FaHg
  XP_019192664.1 130 ACPDFRK-GNCRKGDACEFAHG 150
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MMIGERDHSY LAAQVTNWYS GDQTASIHFS SSPRDNAGEE FSPSLQNDAA LKAFQRYLPS  60
NSSDGDCDGG KDDGEFPADA YSCDQFRMYE FKVRKCARGR SHDWTECPFA HPGEKARRRD  120
PRACHYSGTA CPDFRKGNCR KGDACEFAHG VFECWLHPAR YRTQPCKDGL NCKRRVCFFA  180
HSPEQLRVLS PRYDGSPQRY GGFDTSSSCA KTIHFVSSPE SGSPPSESPP LSPMTTANSV  240
NSLSRSLGSN YVNEMVASLR QLQLNKVKSM PSSWTVQIGS PVHGSPVLPV TRPGFLSLPS  300
TPTQCIPRSH FDLWEESLRE EEDEIPMERV ESGRGLRARM FQKLSQENPL DGYPNPSDAP  360
NPDVGWVSDL IN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-110C3H family protein