PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192394.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 519aa    MW: 56389 Da    PI: 5.3862
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.31.1e-1261525151374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv++L++cA  v+ g+++la +l+ +l+ l  + ++g  + ++a yf  AL++rl+   ++ ++ +    +      e    ++ f+e+ P+lkf
  XP_019192394.1 152 LVHALMTCAVSVQRGEFSLAGSLIDELQLLltRVNSGCGIGKVAGYFIDALSKRLYT--PQGVSLM---GS----AYEDEILYSHFYEAAPYLKF 237
                     689*************************9987889999******************9..3333222...22....3344456789********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g +La++A++++v+f f+ ++a+rl+d
  XP_019192394.1 238 AHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLKLAELARSVNVRFAFRGVAASRLDD 332
                     *********************************************************************************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+v ++Ea+aVn+++qlh+ll  +    s++d+vL  ++sl+Pkvv+vveqea+hn+++Fl+rf+e+l+yys++fdslea     ++ ++
  XP_019192394.1 333 VKSWMLQVGSNEAVAVNSIMQLHKLLGPDPIRGSPIDTVLGWIRSLNPKVVTVVEQEANHNQPEFLDRFTESLYYYSTMFDSLEAC---PAQPEK 424
                     **************************99999999**************************************************99...566677 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++++rei+nvv+ceg +r+erhe l+kW++rl+ aGFkp++l+++a kqa++ll  ++ +gy+vee +g+l+lgW++rpL+++SaW+
  XP_019192394.1 425 ALAEMYIQREICNVVCCEGVARVERHEPLGKWKARLTGAGFKPLNLGSNAFKQASMLLTLFSAEGYNVEETEGCLTLGWHSRPLIAASAWQ 515
                     788888************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MSPHDSSITS SSGSSSSSCS ASHVDQIDSL LAGAGYMVRS SDLRHVAQRL EHLESFMGSS  60
PMGSEISQHL GNDVVHQNPS DLGSWVDSLL SELHPPPVPE FAAPSDSNFV PAAGPTGWSE  120
CEAMLQQPPQ IVSPAHLTVV TAMEQEDSGI RLVHALMTCA VSVQRGEFSL AGSLIDELQL  180
LLTRVNSGCG IGKVAGYFID ALSKRLYTPQ GVSLMGSAYE DEILYSHFYE AAPYLKFAHF  240
TANQAILEAF HGHDCVHVID FNLMHGLQWP ALIQALALRP GGPPLLRLTG IGPPSPDGRD  300
SLREIGLKLA ELARSVNVRF AFRGVAASRL DDVKSWMLQV GSNEAVAVNS IMQLHKLLGP  360
DPIRGSPIDT VLGWIRSLNP KVVTVVEQEA NHNQPEFLDR FTESLYYYST MFDSLEACPA  420
QPEKALAEMY IQREICNVVC CEGVARVERH EPLGKWKARL TGAGFKPLNL GSNAFKQASM  480
LLTLFSAEGY NVEETEGCLT LGWHSRPLIA ASAWQASRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-141GRAS family protein