PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192308.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 311aa    MW: 35037.7 Da    PI: 7.7172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.7e-1034972997
                    -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    + e++++ ++ +++  sWev+      +g+ ++tkGW  F+ +++++  D ++F+++g s+f  +v+v+
  XP_019192308.1 34 V-EQEVEQVMLTSQKGSWEVQT--HTFGGELYFTKGWDAFALQHDICYADLLLFEHTGGSSF--KVRVL 97
                    3.34456677777888******..999999**************************999999..66555 PP
2B334.34.1e-112222941588
                     -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      + +p +f+ ++g+   ++  + l+   s ++ ++k+  ++++++  +++++GW+eF   n+Lk+g++++Fkl +++
  XP_019192308.1 222 YMHIPANFCLANGLY--CNARICLKGpCSEQEVSLKV--CRGGRTiyTIISRGWSEFIAGNDLKVGEICTFKLRSTE 294
                     589*********998..7889*****44558888888..77777777999**********************87643 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MHENGKRGRT IYFRIAGGAC LFLELPPIIS KKLVEQEVEQ VMLTSQKGSW EVQTHTFGGE  60
LYFTKGWDAF ALQHDICYAD LLLFEHTGGS SFKVRVLGAT CCEKDFQGGR AQGKNAEDSV  120
KLEVDIDEVP HDHAHDKVTK RGRTQGKNAE DSEDSVEFEV DLDEVEVDMD EVPSPVKIQK  180
HDHAKKVTRR KRNPKVVNMS STDRSQFVRS IKQYNIRRRS PYMHIPANFC LANGLYCNAR  240
ICLKGPCSEQ EVSLKVCRGG RTIYTIISRG WSEFIAGNDL KVGEICTFKL RSTEGSSNGV  300
VFDVDVLRKS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-09B3 family protein