PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192307.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 322aa    MW: 36700.6 Da    PI: 7.0715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-10461083197
                     .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     e++++ ++ +++  sWev+      +g+ ++tkGW  F+ +++++  D ++F+++g s+f  +v+v+
  XP_019192307.1  46 EQEVEQVMLTSQKGSWEVQT--HTFGGELYFTKGWDAFALQHDICYADLLLFEHTGGSSF--KVRVL 108
                     34456667777888******..999999**************************999999..66555 PP
2B334.24.4e-112333051588
                     -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      + +p +f+ ++g+   ++  + l+   s ++ ++k+  ++++++  +++++GW+eF   n+Lk+g++++Fkl +++
  XP_019192307.1 233 YMHIPANFCLANGLY--CNARICLKGpCSEQEVSLKV--CRGGRTiyTIISRGWSEFIAGNDLKVGEICTFKLRSTE 305
                     589*********998..7889*****44558888888..77777777999**********************87643 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MLFYLHFHSV FFLYFQESSS KVIFFYYLNK LGEQELPPII SKKLVEQEVE QVMLTSQKGS  60
WEVQTHTFGG ELYFTKGWDA FALQHDICYA DLLLFEHTGG SSFKVRVLGA TCCEKDFQGG  120
RAQGKNAEDS VKLEVDIDEV PHDHAHDKVT KRGRTQGKNA EDSEDSVEFE VDLDEVEVDM  180
DEVPSPVKIQ KHDHAKKVTR RKRNPKVVNM SSTDRSQFVR SIKQYNIRRR SPYMHIPANF  240
CLANGLYCNA RICLKGPCSE QEVSLKVCRG GRTIYTIISR GWSEFIAGND LKVGEICTFK  300
LRSTEGSSNG VVFDVDVLRK ST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-09B3 family protein