PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191256.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 683aa MW: 77306.5 Da PI: 7.603

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.8e-21	64	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019191256.1 64 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 148 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDQVDVDVDG SSSIPVDQDL VGLVVSNADE 60 AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC 120 GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLCSHR SVGDNQLLYL QGLKDSGVAL 180 ADGIRRRQST ETDFFFDFEL DLDARDESPL HECNVWMRVF DEREDRIVCV LFKVFSRSMG 240 GKSPQTIMTD QCAAMAAAIS KVFPTSRHRL CIWHIGENSK KHIKTLRSNK DFLDMFNYVL 300 KYTETEAEFQ FYWTRLVTDY KCHKNTWLEK LYDCREKWCP AFNKDYFSGG ILSSQRSETT 360 NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA QGVPAMMMEH VKLLSHAREV 420 YTIEIYFLFE EQFMKGSACH QEMVLNDGRQ QKYHVWRPDI DIIRHEVSFN AANLDISCSC 480 KLMSELGILC CHCIRILHVH CVSSIPDKYI LKRWTKKVID GRNVNIDSMV YNVGVPPSIW 540 VFDISRKFQR LVVSSQDSSV ARKLCDEAVD DVKKKVEAEV RHVHIEECGV SSSSGGVQNP 600 SSRRLKGERN KRRSGVIEKK YSLARGRRSA ANKAALSTKG AVQSLVLENI SKLAGDGYLV 660 HPSSSSSDFV QFSKGLDDNV GVD

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDQVDVDVDG SSSIPVDQDL VGLVVSNADE  60
AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC  120
GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLCSHR SVGDNQLLYL QGLKDSGVAL  180
ADGIRRRQST ETDFFFDFEL DLDARDESPL HECNVWMRVF DEREDRIVCV LFKVFSRSMG  240
GKSPQTIMTD QCAAMAAAIS KVFPTSRHRL CIWHIGENSK KHIKTLRSNK DFLDMFNYVL  300
KYTETEAEFQ FYWTRLVTDY KCHKNTWLEK LYDCREKWCP AFNKDYFSGG ILSSQRSETT  360
NHSISRRLSK TAGLCDFYSS FVSVISEWRS KENGEDFRCA QGVPAMMMEH VKLLSHAREV  420
YTIEIYFLFE EQFMKGSACH QEMVLNDGRQ QKYHVWRPDI DIIRHEVSFN AANLDISCSC  480
KLMSELGILC CHCIRILHVH CVSSIPDKYI LKRWTKKVID GRNVNIDSMV YNVGVPPSIW  540
VFDISRKFQR LVVSSQDSSV ARKLCDEAVD DVKKKVEAEV RHVHIEECGV SSSSGGVQNP  600
SSRRLKGERN KRRSGVIEKK YSLARGRRSA ANKAALSTKG AVQSLVLENI SKLAGDGYLV  660
HPSSSSSDFV QFSKGLDDNV GVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	4e-39	FAR1 family protein