PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191071.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26792 Da    PI: 9.7869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.8e-171051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+ 
  XP_019191071.1 10 FITNDSARKATLKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                    89**************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT LKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEVWPS  60
TAGAQRVVAQ FKRMPEMEQS KKMVNQEGFI RQRIAKASEQ LKKQHKENRE KEITEVMYQC  120
LTGKGLHSLI LTDLNDLAWL LDQKLKEISK KMEDLKKAAP PAAAASQPAA AAAPQEDGID  180
LGQRPPPQWF AEWMMSNNQQ MGFEHGGGGG GGGAEEMMMP AFNENHHPIP MWPAPGGAFF  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATLKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-60M-type_MADS family protein