PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191028.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 691aa MW: 80556.7 Da PI: 6.8431

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	1e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFsvrk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w+v ++++ HnHel XP_019191028.1 68 EYYRNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPMRKKSTGEHHRDRKSVRCGCDAKMYLSKEVmdgVSQWCVVQFSNVHNHELL 159 69******************8888.***************************************98867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MVSVPSKNLW MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF 60 KSDEDAFEYY RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSTGEHHRD 120 RKSVRCGCDA KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER 180 ILLLSKAGFP IHRIVKVLEL EKEIHGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES 240 DTLDLLEACK AAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS 300 ITYGMLFGVW LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDL 360 GIRDAIQSEL PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYD LESVEEFECH 420 WNEMTSRFGL NSDKHIALLF LLRVSWASAY TRGCFVAQMN SMSYAKYINA FLKEVFGKHT 480 CLRSFFDRVA ISSNYKTRSH DDWQYMHLRT CSPVEEHAKN VLTDFSFSRL QSELILAMQY 540 TASEMANGPY ILRHFKKDDE RLVIWAPKDE QIHCSCKEFE TSGILCRHAL RVLLMKNYFQ 600 LPEKYFLNRW RQESSLLPYD NIRNGYSNGD WFQEFNALTA TLFSESSLTV ERSNYVHQEL 660 TKQLTRLIDE VKSMPPPNGV VMDSSLSPVN I

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MVSVPSKNLW MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF  60
KSDEDAFEYY RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSTGEHHRD  120
RKSVRCGCDA KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER  180
ILLLSKAGFP IHRIVKVLEL EKEIHGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES  240
DTLDLLEACK AAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS  300
ITYGMLFGVW LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDL  360
GIRDAIQSEL PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYD LESVEEFECH  420
WNEMTSRFGL NSDKHIALLF LLRVSWASAY TRGCFVAQMN SMSYAKYINA FLKEVFGKHT  480
CLRSFFDRVA ISSNYKTRSH DDWQYMHLRT CSPVEEHAKN VLTDFSFSRL QSELILAMQY  540
TASEMANGPY ILRHFKKDDE RLVIWAPKDE QIHCSCKEFE TSGILCRHAL RVLLMKNYFQ  600
LPEKYFLNRW RQESSLLPYD NIRNGYSNGD WFQEFNALTA TLFSESSLTV ERSNYVHQEL  660
TKQLTRLIDE VKSMPPPNGV VMDSSLSPVN I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein