PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019189897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24734.6 Da PI: 8.9399 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.7e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ + XP_019189897.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63 78999999*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MAKRPSMGRQ KIKIEKIEMK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV 60 FSFGHPNVEL IIDRFLSLNQ HPLSSNNATL QLVEAHRSAT VREMNLQLTQ IMAESEIERK 120 RGEALDEMRK ESRRQHWWEA PVCELGLPEL QQLRDAMEEL KKNVSAQAEK INTCTVLAMD 180 GKTTGYPETK PPRIMVNYTH HHHQALHDFG YDLTFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-55 | M-type_MADS family protein |