PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189701.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 285aa    MW: 32590.6 Da    PI: 9.9175
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189701.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.1e-21952144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k i+n  +r vt+ kR++g+ KKA+ELS+LCd++v++i+++++ 
  XP_019189701.1  9 KLISNRKRRCVTYQKRKKGLEKKAYELSTLCDVKVCLIMYGPKE 52
                    569**************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MGRRKKELKL ISNRKRRCVT YQKRKKGLEK KAYELSTLCD VKVCLIMYGP KENTENQTPE  60
PNIWPENPEF VSSMIGSYQD QLESNKKIRT QDLSTFYERV KKRDERKNNV NAVKYPTWNE  120
RLNRMSACEL SNVISELDVK IKAAEERIDF LKGKRITVSP QTPDLPPPPL VSRGLVGTSS  180
LQMESIQQTS YNINPAMINH DGRHLVAAAT DVRVTKNRVM MTKVEPMPSS LLSCAQPAAV  240
MRPYLQNLPA ATLPYGCNLP AAVIPYGQYQ WMHYSDNVMR SGYYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210GRRKKELKL
2317RRKKELKLISNRKRR
3418RRKKELKLISNRKRR
41426RKRRCVTYQKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.14e-23M-type_MADS family protein