PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019188940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GATA | ||||||||
Protein Properties | Length: 248aa MW: 27792.7 Da PI: 6.6695 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.4 | 4.2e-18 | 158 | 192 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l XP_019188940.1 158 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 192 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MDIYGGVSAP ELFRIDDLLD FSNADIFSSS AVDDSSNHHL LPHSAETTSS PADNYFFNPH 60 SSADFTHDLC VPSEDAAELE WLSTFVEDSF SDIAANSTMN LTASSAAFQG RSRSKRSRSA 120 ATGWTAAMQP PPPPQETVTH EISNNKKRES SEDVPRRCTH CASEKTPQWR TGPLGPKTLC 180 NACGVRFKSG RLVPEYRPAA SPTFVLTQHS NSHRKVMELR RQKELFRQQQ QQQQQQQQEM 240 YGRHFQVC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 116 | RSRSKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 2e-68 | GATA family protein |