PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019188384.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19720.4 Da PI: 5.9779 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 3.9e-38 | 8 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+++Cv+apyf++++ p+ fa+vhk+FGas+v+kll +lp ++r+da+ s++yeA+ar++dP+yG+v+ i +lqqq+ +l+ae+ XP_019188384.1 8 PCGACKFLRRRCVPECVFAPYFCSDHgPAIFAAVHKVFGASKVSKLLLQLPVHQRSDAIFSIAYEAQARMEDPIYGCVSYIIALQQQVLNLRAEV 102 7***********************9989*****************************************************************99 PP DUF260 95 allk 98 +++ XP_019188384.1 103 MEAR 106 8776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MASGASSPCG ACKFLRRRCV PECVFAPYFC SDHGPAIFAA VHKVFGASKV SKLLLQLPVH 60 QRSDAIFSIA YEAQARMEDP IYGCVSYIIA LQQQVLNLRA EVMEARALHA QAQYLLNSMN 120 AGNQWATTTV GGPPEPFSVA DQNVTNPQYS VDHFNNGGSF WPPEMYTGEE AVPFPAEGSN 180 M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-50 | LBD family protein |